Do we need albacor based call fast5s at all steps?

ArtRand / signalAlign

HMM-HDP models for MinION signal alignments

MIT License

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Do we need albacor based call fast5s at all steps? #21

Open vahidAK opened 4 years ago

vahidAK commented 4 years ago

Hi @mitenjain and @ArtRand ,

This might be a silly question, bu I was wondering do we need albacore fast5 base called files or they just needed for the extract step? If we built readdb and we have fastq. can we do other steps using output fast5 files from nanopore run but not albacor based call fast5s. Thanks, Vahid.