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ArtRand / signalAlign

HMM-HDP models for MinION signal alignments
MIT License
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Metrichor version compatibility #7

Open jckhearn opened 7 years ago

jckhearn commented 7 years ago

Hi Art, I'd like to use signalAlign with R9 (not R9.4) data called with dragonet 1.23.0 can the program be modified for this please? Thanks, Jack

ArtRand commented 7 years ago

Hello Jack, sorry about the slow reply. You can probably just add 1.23.0 at: https://github.com/ArtRand/signalAlign/blob/master/scripts/signalAlignLib.py#L261 If the HDF file structure is different, it should complain and you can probably track it down.

Alternatively, you can send me a file or two (arand@soe.ucsc.edu) and I'll integrate the 1.23.0 into and update the repo.

FYI, if you modify signalAlignLib.py in the signalAlign/scripts/ folder you need to rebuild the program (just copies the module basically).

Thanks, let me know if you have any questions.

A