yuxuanlan
commented
6 years ago cd ./externalTools; make; may solve your problem.
Open porpheria opened 7 years ago
yuxuanlan
commented
6 years ago cd ./externalTools; make; may solve your problem.
After completing make, successfully, when I tried 'make test', it gives me the below error
make test
_#cd .//bin && ./signalAlignLibTests cd .//bin && ./testSignalAlign test_signalAlign_library (main.LibTest) ... Running test case test_first_kmer_index Running test case test_second_kmer_index Running test case test_sixth_kmer_index Running test case test_multiset_creation Running test case test_word_id_to_multiset_id Running test case test_kmer_id Running test case test_serialization Running test case test_nhdp_serialization Running test case test_mle_params Running test case test_distr_metrics Running test case test_nhdp_distrs Running test case test_bands Running test case test_diagonal Running test case test_logAdd Running test case test_Sequence Running test case test_referenceSequence Running test case test_eventSequence Running test case test_loadNanoporeRead Running test case test_1dNanoporeRead Running test case test_getSplitPoints Running test case test_hdCellConstruct Running test case test_hdCellConstructWorstCase Running test case test_dpDiagonal Running test case test_dpMatrix Running test case test_getBlastPairs sh: 1: ./cPecanLastz: not found pclose failed when getting rid of lastz pipe with value 32512 and command ./cPecanLastz --hspthresh=1800 --chain --strand=plus --gapped --format=cigar --gap=100,100 --ambiguous=iupac,100,100 /tmp/stTmp20592_0 /tmp/stTmp20592_1 FAIL test_pysam (main.signalAlignLibTests) ... ok test_zymo_reads (main.SignalAlignAlignmentTest) ... ok test_pUC_r9_reads_5mer (main.SignalAlignAlignmentTest) ... ok test_pUC_r9_reads_6mer (main.SignalAlignAlignmentTest) ... ok test_Ecoli1D_reads_5mer (main.SignalAlignAlignmentTest) ... ok test_EM (main.signalAlign_EM_test) ... ok
====================================================================== FAIL: test_signalAlign_library (main.LibTest)
Traceback (most recent call last): File "./testSignalAlign", line 37, in test_signalAlign_library self.assertTrue(result == 0, "signalAlign Library Tests Fail") AssertionError: signalAlign Library Tests Fail
Ran 7 tests in 137.662s
FAILED (failures=1)
cd ././sonLib/bin && ./sonLibTests_