added command line options to run_script.py
--inputYAML: specify input YAML files of recipes (makes it easier to run subsets of the simulations)
--outputDir: specify output directory
will default to original values (recipes.yaml, ./output)
Moved dictionary / path definitions from start of raw_script.py to an importable file (simulationDefinitions), to keep user defined input separate from the main script.
added command line options to run_script.py --inputYAML: specify input YAML files of recipes (makes it easier to run subsets of the simulations) --outputDir: specify output directory
will default to original values (recipes.yaml, ./output)
Moved dictionary / path definitions from start of raw_script.py to an importable file (simulationDefinitions), to keep user defined input separate from the main script.