AstraZeneca-NGS / VarDict

VarDict
MIT License
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Scripts for parallel run of R and pl scripts #110

Closed PolinaBevad closed 5 years ago

PolinaBevad commented 5 years ago

Description

Added scripts for running R and pl on huge data by splitting by chromosomes.

The problem appeared with gVCF (https://github.com/AstraZeneca-NGS/VarDictJava/issues/227), for example, raw output for exome run was about 55 Gb and R script can be very memory consuming (192Gb RAM wasn't enough), so it is better to split raw output of VarDict to several files and process them in parallel.