If some variant is followed by SV and this SV is skipped due to filter (without split read support), then information about the variant will still be saved in $pinfo1 field and will be output twice.
Issue: https://github.com/AstraZeneca-NGS/VarDictJava/issues/226
Added $pinfo1 field clear to avoid duplication of variant if SV was skipped.
Description
If some variant is followed by SV and this SV is skipped due to filter (without split read support), then information about the variant will still be saved in
$pinfo1field and will be output twice. Issue: https://github.com/AstraZeneca-NGS/VarDictJava/issues/226 Added$pinfo1field clear to avoid duplication of variant if SV was skipped.