var2vcf_paired.pl excludes simultaneous mutations

AstraZeneca-NGS / VarDict

VarDict

MIT License

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var2vcf_paired.pl excludes simultaneous mutations #155

Closed esamorodnitsky closed 3 years ago

esamorodnitsky commented 3 years ago

I tried to downloading the latest version of VarDict. To call, tumor-normal variants, I ran VarDict and testsomatic.R. After running the first two steps, the position I am interested in, which has two different variants, has both variants in the VCF. However, after I run var2vcf_paired.pl, only one of them (the higher frequency one?) is reported.

esamorodnitsky commented 3 years ago

Never mind, I didn't see the -A flag.