Fix for realignins offset (substr outside of string error)

AstraZeneca-NGS / VarDict

VarDict

MIT License

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Fix for realignins offset (substr outside of string error) #95

Closed PolinaBevad closed 5 years ago

PolinaBevad commented 5 years ago

Description

This PR fixes offset problem in realignins() for HCC2218 somatic set, when substr is outside of string because of the incorrect condition in the loop. Tests were added to Java version.