search

AstraZeneca-NGS / VarDict

VarDict
MIT License
187 stars 62 forks source link

vardic from conda errror #99

Closed bioinfo-dirty-jobs closed 5 years ago

bioinfo-dirty-jobs commented 5 years ago

Dear all, I try to use the last version of vardict on bioconda. I don't found any R tools 

testsomatic.R 
testsomatic.R: command not found

It is normal?

PolinaBevad commented 5 years ago

@bioinfo-dirty-jobs, hello! For the last version of VarDict this file must be in vardict-2018.10.18-1/share/ folder of your conda installation folder. I tried to install it through miniconda and it is here. Also the links for it are in bin folder of conda. Could you please check this folder? Please be sure that you run this script after vardict step and R is installed on your system. testsomatic.R waits for the raw data from vardict to process it.

PolinaBevad commented 5 years ago

@bioinfo-dirty-jobs, hello! Because there was no answer from you on the last message, I will close the issue. But you can reopen the issue if the problem still occurs. Thank you!