Exception in thread "main" java.lang.IndexOutOfBoundsException: No group 1
at java.base/java.util.regex.Matcher.group(Matcher.java:647)
at com.astrazeneca.vardict.VarDictLauncher.getSampleNames(VarDictLauncher.java:222)
at com.astrazeneca.vardict.VarDictLauncher.initResources(VarDictLauncher.java:85)
at com.astrazeneca.vardict.VarDictLauncher.start(VarDictLauncher.java:49)
at com.astrazeneca.vardict.Main.main(Main.java:15)
My knowledge in Java is very limited and I am unable to figure out what I did wrong... Hopefully someone with more experience and knowledge can help me solve this issue.
I am trying to create a nf-core module for VarDict Java, but I'm having some trouble getting the tests up and running. When I execute the command:
I get this error:
The variables in the command are:
My knowledge in Java is very limited and I am unable to figure out what I did wrong... Hopefully someone with more experience and knowledge can help me solve this issue.