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AstrobioMike / AstrobioMike.github.io

Site to help biologists wade their way into bioinformatics.
https://astrobiomike.github.io/
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Error in installing sabre #31

Closed charles7007 closed 3 years ago

charles7007 commented 3 years ago

Hi, I am trying to demultiplex on my metabarcoding data. I found that "sabre" can do it. I have try to install sabre, but face some problem with installing. Hoping for a guide from you all to me to solve the problem.

It shows an error at the step "make" file.

1

AstrobioMike commented 3 years ago

Hey there, Charles!

I see you have conda setup. Have you tried a conda install for sabre? E.g.:

conda install -c conda-forge -c bioconda -c defaults sabre

(I've edited/updated the demultiplexing page to include this there 👍)

charles7007 commented 3 years ago

Hey there, Charles!

I see you have conda setup. Have you tried a conda install for sabre? E.g.:

conda install -c conda-forge -c bioconda -c defaults sabre
charles7007 commented 3 years ago

Hey there, Charles! I see you have conda setup. Have you tried a conda install for sabre? E.g.:

conda install -c conda-forge -c bioconda -c defaults sabre

Thank you, Mike. I did it! Finally, I can run it.