AstrobioMike / GToTree

A user-friendly workflow for phylogenomics
GNU General Public License v3.0
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need to update pfam searching now that it's hosted by interpro #65

Closed AstrobioMike closed 1 year ago

AstrobioMike commented 1 year ago

https://pfam.xfam.org/

https://www.ebi.ac.uk/interpro/

look into gtt-get-additional-pfam-targets.sh

AstrobioMike commented 1 year ago

the test data version isn't found, but the base one is: https://www.ebi.ac.uk/interpro/entry/pfam/PF00238/

need to figure out if providing versions is going to be a problem, maybe note we can only use base pfam IDs and we're report what was grabbed

AstrobioMike commented 1 year ago

updated as of v1.7.05, https://github.com/AstrobioMike/GToTree/commit/fa7cd19eb51aaf19dd0bd8858cbc02f56aaec029