search

AstrobioMike / GToTree

A user-friendly workflow for phylogenomics
GNU General Public License v3.0
199 stars 25 forks source link

Problem downloading the Actinobacteria.hmm #66

Closed oduwoleiyanu closed 1 year ago

oduwoleiyanu commented 1 year ago

I got this error while using the GToTree for phylogenomics. Is there something I can do to fix that.

/home/ioduwole/miniconda3/envs/gtotree/bin/GToTree: line 1008: curl: command not found md5sum: /home/ioduwole/miniconda3/envs/gtotree/share/gtotree/hmm_sets/Actinobacteria.hmm: No such file or directory

  There seems to have been a problem downloading the Actinobacteria. hmm file :(
  Please try again, and if problems continue, please report an issue here:
          https://github.com/AstrobioMike/GToTree/issues
oduwoleiyanu commented 1 year ago

I got this error while using the GToTree for phylogenomics. Is there something I can do to fix that.

/home/ioduwole/miniconda3/envs/gtotree/bin/GToTree: line 1008: curl: command not found md5sum: /home/ioduwole/miniconda3/envs/gtotree/share/gtotree/hmm_sets/Actinobacteria.hmm: No such file or directory

  There seems to have been a problem downloading the Actinobacteria. hmm file :(
  Please try again, and if problems continue, please report an issue here:
          https://github.com/AstrobioMike/GToTree/issues

Please, never mind I think I had issues with installing the curl command

AstrobioMike commented 1 year ago

Hiya, @oduwoleiyanu :)

Sorry about that! I didn't mean to expect curl to be present, or need to make the user install it (especially without telling anyone!). It looks like i forgot to include curl in the conda package, and it just hasn't come up yet. To be sure, you installed curl on your own in order to get around this?

AstrobioMike commented 1 year ago

Never mind, i added it now regardless, which i think it needed 👍 Thank you for writing in about this!

(added to conda build as of v1.7.05 build 1)