Closed jeffctaylor closed 9 years ago
alexstrilets
commented
9 years ago I can only see the problem with images form TransposeTest directory, other two images (form BigImageTest directory and M100_alma.fits) are loading fine on Mac, Ubuntu and CentOS. h_m51_b_s05_drz_sci.fits takes a while to load but it loads fine, M100_alma.fits loads really fast an without any problems. Looks like your local build problem.
jeffctaylor
commented
9 years ago Okay, that's good to know. I'll make sure to try these images on my Ubuntu machine as well. If I'm still having problems there, then we'll see what needs to be done.
jeffctaylor
commented
9 years ago I'm running code compiled from the same branch on both machines (Ubuntu VM on Macbook and Ubuntu desktop). On the Ubuntu machine I get the same results as you, but on the VM none of the images I initially mentioned are loading. I wonder if it's just a memory problem or something like that. Is there any way to get more detailed information about why an image doesn't load? Here's the output I see in the terminal:
In [11]: i[0].loadFile('/home/jeff/CARTA/Images/CARTAImages/CubesTest/M100_alma.fits')
Debug: WcsPlotter plugin is handling hook # 5
Debug: CasaImageLoader plugin is handling hook # 1
Debug: CasaImageLoader plugin trying to load image: "/home/jeff/CARTA/Images/CARTAImages/CubesTest/M100_alma.fits"
Warning: -paged image open failed: /home/jeff/CARTA/Images/CARTAImages/CubesTest/M100_alma.fits is not a directory
(../../../../../../dev/CARTAvis/carta/cpp/plugins/CasaImageLoader/CasaImageLoader.cpp:90, Image::ImageInterface::SharedPtr CasaImageLoader::loadImage(const QString&))
2015-10-19 13:24:10 WARN MeasIERS::findTab (file /home/jeff/dev/casacore-2.0.1/measures/Measures/MeasIERS.cc, line 365) Requested data table Observatories cannot be found in the searched directories:
2015-10-19 13:24:10 WARN MeasIERS::findTab (file /home/jeff/dev/casacore-2.0.1/measures/Measures/MeasIERS.cc, line 365)+ ./
2015-10-19 13:24:10 WARN MeasIERS::findTab (file /home/jeff/dev/casacore-2.0.1/measures/Measures/MeasIERS.cc, line 365)+ ./data/
2015-10-19 13:24:10 WARN MeasIERS::findTab (file /home/jeff/dev/casacore-2.0.1/measures/Measures/MeasIERS.cc, line 365)+ /home/jeff/aips++/data//ephemerides/
2015-10-19 13:24:10 WARN MeasIERS::findTab (file /home/jeff/dev/casacore-2.0.1/measures/Measures/MeasIERS.cc, line 365)+ /home/jeff/data//ephemerides/
2015-10-19 13:24:10 WARN MeasIERS::findTab (file /home/jeff/dev/casacore-2.0.1/measures/Measures/MeasIERS.cc, line 365)+ /usr/local/ephemerides/
2015-10-19 13:24:10 WARN MeasIERS::findTab (file /home/jeff/dev/casacore-2.0.1/measures/Measures/MeasIERS.cc, line 365)+ /usr/local/ephemerides/
2015-10-19 13:24:10 WARN MeasIERS::findTab (file /home/jeff/dev/casacore-2.0.1/measures/Measures/MeasIERS.cc, line 365)+ /home/jeff/aips++/data//geodetic/
2015-10-19 13:24:10 WARN MeasIERS::findTab (file /home/jeff/dev/casacore-2.0.1/measures/Measures/MeasIERS.cc, line 365)+ /home/jeff/data//geodetic/
2015-10-19 13:24:10 WARN MeasIERS::findTab (file /home/jeff/dev/casacore-2.0.1/measures/Measures/MeasIERS.cc, line 365)+ /usr/local/geodetic/
2015-10-19 13:24:10 WARN MeasIERS::findTab (file /home/jeff/dev/casacore-2.0.1/measures/Measures/MeasIERS.cc, line 365)+ /usr/local/geodetic/
2015-10-19 13:24:10 SEVERE MeasTable::initObservatories() (file /home/jeff/dev/casacore-2.0.1/measures/Measures/MeasTable.cc, line 2910) Cannot read table of Observatories
Warning: -unpaged image open failed: 2015-10-19 13:24:10 SEVERE MeasTable::initObservatories() (file /home/jeff/dev/casacore-2.0.1/measures/Measures/MeasTable.cc, line 2910) Cannot read table of Observatories
(../../../../../../dev/CARTAvis/carta/cpp/plugins/CasaImageLoader/CasaImageLoader.cpp:98, Image::ImageInterface::SharedPtr CasaImageLoader::loadImage(const QString&))
Debug: -out of ideas, bailing out
Warning: Could not find any plugin to load image
(../../../../../dev/CARTAvis/carta/cpp/core/Data/Image/DataSource.cpp:591, bool Carta::Data::DataSource::_setFileName(const QString&))
Warning: "Unable to load image: /home/jeff/CARTA/Images/CARTAImages/CubesTest/M100_alma.fits. Please check the file is a supported image format."
(../../../../../dev/CARTAvis/carta/cpp/core/Data/Error/ErrorManager.cpp:81, void Carta::Data::ErrorManager::registerWarning(const QString&))
Debug: computeClips std::vector<i x 2>=(10,10)
Debug: quantile quality check:
Debug: 0.025 -> 2.5 0.03 0.005
Debug: 0.975 -> 97.5 0.98 0.005
Debug: -----------------------------
Debug: Trying simple fits parser on "/home/jeff/CARTA/Images/mexinputtest.fits"
Debug: SimpleFitsParser::loadFile( "/home/jeff/CARTA/Images/mexinputtest.fits" )
Debug: File "/home/jeff/CARTA/Images/mexinputtest.fits" open.
Warning: "Cannot deal with files that have NAXIS = 0"
(../../../../../../dev/CARTAvis/carta/cpp/plugins/WcsPlotter/SimpleFitsParser.cpp:593, bool WcsPlotterPluginNS::SimpleFitsParser::loadFile(const FitsFileLocation&))
Debug: simple fits parser failed
Debug: Writing 2880 ----
Debug: "SIMPLE = T /Standard FITS BITPIX = -32 /Floating point (32 bit) NAXIS = 2 NAXIS1 = 10 NAXIS2 = 10 BSCALE = 1.000000000000E+00 /PHYSICAL = PIXEL*BSCALE + BZERO BZERO = 0.000000000000E+00 BTYPE = 'Intensity' OBJECT = ' ' BUNIT = ' ' /Brightness (pixel) unit EQUINOX = 2.000000000000E+03 RADESYS = 'FK5 ' LONPOLE = 1.800000000000E+02 LATPOLE = -2.770900000000E+01 PC01_01 = 1.000000000000E+00 PC02_01 = 0.000000000000E+00 PC01_02 = 0.000000000000E+00 PC02_02 = 1.000000000000E+00 CTYPE1 = 'RA---TAN' CRVAL1 = 5.307100000000E+01 CDELT1 = 1.000000000000E-03 CRPIX1 = 5.000000000000E+00 CUNIT1 = 'deg ' CTYPE2 = 'DEC--TAN' CRVAL2 = -2.770900000000E+01 CDELT2 = 1.000000000000E-03 CRPIX2 = 5.000000000000E+00 CUNIT2 = 'deg ' EXTNAME = 'SCI ' EXTVER = 1 DATE = '2015-10-19T13:24:09.702000' /Date FITS file was written TIMESYS = 'UTC ' /Time system for HDU END "
Debug: casafits: ("SIMPLE = T /Standard FITS ", "BITPIX = -32 /Floating point (32 bit) ", "NAXIS = 2 ", "NAXIS1 = 10 ", "NAXIS2 = 10 ", "BSCALE = 1.000000000000E+00 /PHYSICAL = PIXEL*BSCALE + BZERO ", "BZERO = 0.000000000000E+00 ", "BTYPE = 'Intensity' ", "OBJECT = ' ' ", " ", "BUNIT = ' ' /Brightness (pixel) unit ", "EQUINOX = 2.000000000000E+03 ", "RADESYS = 'FK5 ' ", "LONPOLE = 1.800000000000E+02 ", "LATPOLE = -2.770900000000E+01 ", "PC01_01 = 1.000000000000E+00 ", "PC02_01 = 0.000000000000E+00 ", "PC01_02 = 0.000000000000E+00 ", "PC02_02 = 1.000000000000E+00 ", "CTYPE1 = 'RA---TAN' ", "CRVAL1 = 5.307100000000E+01 ", "CDELT1 = 1.000000000000E-03 ", "CRPIX1 = 5.000000000000E+00 ", "CUNIT1 = 'deg ' ", "CTYPE2 = 'DEC--TAN' ", "CRVAL2 = -2.770900000000E+01 ", "CDELT2 = 1.000000000000E-03 ", "CRPIX2 = 5.000000000000E+00 ", "CUNIT2 = 'deg ' ", "EXTNAME = 'SCI ' ", "EXTVER = 1 ", "DATE = '2015-10-19T13:24:09.702000' /Date FITS file was written ", "TIMESYS = 'UTC ' /Time system for HDU ", "END ")
Debug: Image render 4 xyz
Debug: frame cache hit
Out[11]:
[u'error',
u'Could not load file /home/jeff/CARTA/Images/CARTAImages/CubesTest/M100_alma.fits']But the only thing that shows up in the GUI is Warning: "Unable to load image: /home/jeff/CARTA/Images/CARTAImages/CubesTest/M100_alma.fits. Please check the file is a supported image format."
alexstrilets
commented
9 years ago you did not load CASA data in your VM machine instance, error message is right there, it even tells you directory casa library is looking for casa data files. I usually put casa data into my /usr/local/ directory or in my ~/data directory. Let me know if you need help loading casa data files. Alex
On Mon, Oct 19, 2015 at 7:48 AM, Jeff Taylor notifications@github.com wrote:
I'm running code compiled from the same branch on both machines (Ubuntu VM on Macbook and Ubuntu desktop). On the Ubuntu machine I get the same results as you, but on the VM none of the images I initially mentioned are loading. I wonder if it's just a memory problem or something like that. Is there any way to get more detailed information about why an image doesn't load? Here's the output I see in the terminal:
In [11]: i[0].loadFile('/home/jeff/CARTA/Images/CARTAImages/CubesTest/M100_alma.fits') Debug: WcsPlotter plugin is handling hook # 5 Debug: CasaImageLoader plugin is handling hook # 1 Debug: CasaImageLoader plugin trying to load image: "/home/jeff/CARTA/Images/CARTAImages/CubesTest/M100_alma.fits" Warning: -paged image open failed: /home/jeff/CARTA/Images/CARTAImages/CubesTest/M100_alma.fits is not a directory (../../../../../../dev/CARTAvis/carta/cpp/plugins/CasaImageLoader/CasaImageLoader.cpp:90, Image::ImageInterface::SharedPtr CasaImageLoader::loadImage(const QString&)) 2015-10-19 13:24:10 WARN MeasIERS::findTab (file /home/jeff/dev/casacore-2.0.1/measures/Measures/MeasIERS.cc, line 365) Requested data table Observatories cannot be found in the searched directories: 2015-10-19 13:24:10 WARN MeasIERS::findTab (file /home/jeff/dev/casacore-2.0.1/measures/Measures/MeasIERS.cc, line 365)+ ./ 2015-10-19 13:24:10 WARN MeasIERS::findTab (file /home/jeff/dev/casacore-2.0.1/measures/Measures/MeasIERS.cc, line 365)+ ./data/ 2015-10-19 13:24:10 WARN MeasIERS::findTab (file /home/jeff/dev/casacore-2.0.1/measures/Measures/MeasIERS.cc, line 365)+ /home/jeff/aips++/data//ephemerides/ 2015-10-19 13:24:10 WARN MeasIERS::findTab (file /home/jeff/dev/casacore-2.0.1/measures/Measures/MeasIERS.cc, line 365)+ /home/jeff/data//ephemerides/ 2015-10-19 13:24:10 WARN MeasIERS::findTab (file /home/jeff/dev/casacore-2.0.1/measures/Measures/MeasIERS.cc, line 365)+ /usr/local/ephemerides/ 2015-10-19 13:24:10 WARN MeasIERS::findTab (file /home/jeff/dev/casacore-2.0.1/measures/Measures/MeasIERS.cc, line 365)+ /usr/local/ephemerides/ 2015-10-19 13:24:10 WARN MeasIERS::findTab (file /home/jeff/dev/casacore-2.0.1/measures/Measures/MeasIERS.cc, line 365)+ /home/jeff/aips++/data//geodetic/ 2015-10-19 13:24:10 WARN MeasIERS::findTab (file /home/jeff/dev/casacore-2.0.1/measures/Measures/MeasIERS.cc, line 365)+ /home/jeff/data//geodetic/ 2015-10-19 13:24:10 WARN MeasIERS::findTab (file /home/jeff/dev/casacore-2.0.1/measures/Measures/MeasIERS.cc, line 365)+ /usr/local/geodetic/ 2015-10-19 13:24:10 WARN MeasIERS::findTab (file /home/jeff/dev/casacore-2.0.1/measures/Measures/MeasIERS.cc, line 365)+ /usr/local/geodetic/ 2015-10-19 13:24:10 SEVERE MeasTable::initObservatories() (file /home/jeff/dev/casacore-2.0.1/measures/Measures/MeasTable.cc, line 2910) Cannot read table of Observatories Warning: -unpaged image open failed: 2015-10-19 13:24:10 SEVERE MeasTable::initObservatories() (file /home/jeff/dev/casacore-2.0.1/measures/Measures/MeasTable.cc, line 2910) Cannot read table of Observatories (../../../../../../dev/CARTAvis/carta/cpp/plugins/CasaImageLoader/CasaImageLoader.cpp:98, Image::ImageInterface::SharedPtr CasaImageLoader::loadImage(const QString&)) Debug: -out of ideas, bailing out Warning: Could not find any plugin to load image (../../../../../dev/CARTAvis/carta/cpp/core/Data/Image/DataSource.cpp:591, bool Carta::Data::DataSource::_setFileName(const QString&)) Warning: "Unable to load image: /home/jeff/CARTA/Images/CARTAImages/CubesTest/M100_alma.fits. Please check the file is a supported image format." (../../../../../dev/CARTAvis/carta/cpp/core/Data/Error/ErrorManager.cpp:81, void Carta::Data::ErrorManager::registerWarning(const QString&)) Debug: computeClips std::vector<i x 2>=(10,10) Debug: quantile quality check: Debug: 0.025 -> 2.5 0.03 0.005 Debug: 0.975 -> 97.5 0.98 0.005 Debug: ----------------------------- Debug: Trying simple fits parser on "/home/jeff/CARTA/Images/mexinputtest.fits" Debug: SimpleFitsParser::loadFile( "/home/jeff/CARTA/Images/mexinputtest.fits" )
Debug: File "/home/jeff/CARTA/Images/mexinputtest.fits" open.
Warning: "Cannot deal with files that have NAXIS = 0" (../../../../../../dev/CARTAvis/carta/cpp/plugins/WcsPlotter/SimpleFitsParser.cpp:593, bool WcsPlotterPluginNS::SimpleFitsParser::loadFile(const FitsFileLocation&)) Debug: simple fits parser failed Debug: Writing 2880 ---- Debug: "SIMPLE = T /Standard FITS BITPIX = -32 /Floating point (32 bit) NAXIS = 2 NAXIS1 = 10 NAXIS2 = 10 BSCALE = 1.000000000000E+00 /PHYSICAL = PIXEL_BSCALE + BZERO BZERO = 0.000000000000E+00 BTYPE = 'Intensity' OBJECT = ' ' BUNIT = ' ' /Brightness (pixel) unit EQUINOX = 2.000000000000E+03 RADESYS = 'FK5 ' LONPOLE = 1.800000000000E+02 LATPOLE = -2.770900000000E+01 PC01_01 = 1.000000000000E+00 PC02_01 = 0.000000000000E+00 PC01_02 = 0.000000000000E+00 PC02_02 = 1.000000000000E+00 CTYPE1 = 'RA---TAN' CRVAL1 = 5.307100000000E+01 CDELT1 = 1.000000000000E-03 CRPIX1 = 5.000000000000E+00 CUNIT1 = 'deg ' CTYPE2 = 'DEC--TAN' CRVAL2 = -2.770900000000E+01 CDELT2 = 1.000000000000E-03 CRPIX2 = 5.000000000000E+00 CUNIT2 = 'deg ' EXTNAME = 'SCI ' EXTVER = 1 DATE = '2015-10-19T13:24:09.702000' /Date FITS file was written TIMESYS = 'UTC ' /Time system for HDU END " Debug: casafits: ("SIMPLE = T /Standard FITS ", "BITPIX = -32 /Floating point (32 bit) ", "NAXIS = 2 ", "NAXIS1 = 10 ", "NAXIS2 = 10 ", "BSCALE = 1.000000000000E+00 /PHYSICAL = PIXEL_BSCALE + BZERO ", "BZERO = 0.000000000000E+00 ", "BTYPE = 'Intensity' ", "OBJECT = ' ' ", " ", "BUNIT = ' ' /Brightness (pixel) unit ", "EQUINOX = 2.000000000000E+03 ", "RADESYS = 'FK5 ' ", "LONPOLE = 1.800000000000E+02 ", "LATPOLE = -2.770900000000E+01 ", "PC01_01 = 1.000000000000E+00 ", "PC02_01 = 0.000000000000E+00 ", "PC01_02 = 0.000000000000E+00 ", "PC02_02 = 1.000000000000E+00 ", "CTYPE1 = 'RA---TAN' ", "CRVAL1 = 5.307100000000E+01 ", "CDELT1 = 1.000000000000E-03 ", "CRPIX1 = 5.000000000000E+00 ", "CUNIT1 = 'deg ' ", "CTYPE2 = 'DEC--TAN' ", "CRVAL2 = -2.770900000000E+01 ", "CDELT2 = 1.000000000000E-03 ", "CRPIX2 = 5.000000000000E+00 ", "CUNIT2 = 'deg ' ", "EXTNAME = 'SCI ' ", "EXTVER = 1 ", "DATE = '2015-10-19T13:24:09.702000' /Date FITS file was written ", "TIMESYS = 'UTC ' /Time system for HDU ", "END ") Debug: Image render 4 xyz Debug: frame cache hit Out[11]: [u'error', u'Could not load file /home/jeff/CARTA/Images/CARTAImages/CubesTest/M100_alma.fits']
But the only thing that shows up in the GUI is Warning: "Unable to load image: /home/jeff/CARTA/Images/CARTAImages/CubesTest/M100_alma.fits. Please check the file is a supported image format."
— Reply to this email directly or view it on GitHub https://github.com/Astroua/CARTAvis/issues/90#issuecomment-149218338.
jeffctaylor
commented
9 years ago Ah, thanks! Now the images are loading on my VM as well. So now the only problematic images are the TransposeTest images.
alexstrilets
commented
9 years ago They are fixed with latest PR from Susan On Oct 19, 2015 8:54 AM, "Jeff Taylor" notifications@github.com wrote:
Ah, thanks! Now the images are loading on my VM as well. So now the only problematic images are the TransposeTest images.
— Reply to this email directly or view it on GitHub https://github.com/Astroua/CARTAvis/issues/90#issuecomment-149238878.
alexstrilets
commented
9 years ago PR #88 resolved this issue
The following images from the CARTAImages repository are currently not loading for me: