Build_Atchem2.sh - make sharedlib issue

[baongocthai]

Hi all,

When I tried to run the Build_Atchem2.sh using the following command: ./build_atchem2.sh mcm/mechanism_test.fac model/configuration/ mcm/

The following log appears: _* facsimile mechanism file: mcm/mechanism_test.fac

• fortran mechanism directory [ default = ./model/configuration/ ]: model/configuration/
• mcm data files directory [ default = ./mcm/ ]: mcm/

call mech_converter.py /home/nus/Documents/Atchem2/AtChem2-1.2/mcm Running fix_fac_file on /home/nus/Documents/Atchem2/AtChem2-1.2/mcm/mechanism_test.fac /home/nus/Documents/Atchem2/AtChem2-1.2/mcm/mechanism_test.fac: file read in 255 items 0 corrections made - now removing old Reading input file looping over inputted RO2s adding RO2 to model/configuration//mechanism.ro2

make sharedlib model/configuration/ make: *** No rule to make target 'sharedlib'. Stop._

Could you advise on how to solve the problem with sharedlib?

Thanks!

[rs028]

@baongocthai are you running the build_atchem2.sh script from the main directory or from the build/ directory?

[baongocthai]

Hi @rs028 , thanks for the guide!! I managed to resolved the problem by looking at your response!

[morshedahmed17]

Hi all,

When I tried to run the Build_Atchem2.sh using the following command: ./build/build_atchem2.sh model_1/mechanism_test.fac model_1/configuration/ mcm/

• facsimile mechanism file: model_1/mechanism_test.fac

• fortran mechanism directory [ default = ./model/configuration/ ]: model_1/configuration/

• mcm data files directory [ default = ./mcm/ ]: mcm/

call mech_converter.py

/Users/tanzinaakther/Desktop/AtChem2/model_1

Running fix_fac_file on /Users/tanzinaakther/Desktop/AtChem2/model_1/mechanism_test.fac

/Users/tanzinaakther/Desktop/AtChem2/model_1/mechanism_test.fac: file read in 255 items

0 corrections made - now removing old

Reading input file

looping over inputted RO2s

adding RO2 to model_1/configuration//mechanism.ro2

make sharedlib model_1/configuration/

make: *** No rule to make target `sharedlib'. Stop.

Not sure how to solve this. It's a similar problem like @baongocthai.

[rs028]

Hi @morshedahmed17, the problem of @baongocthai was launching the build script from within the build/ directory, instead of the main directory. Is this is your case?

[morshedahmed17]

I am running it from the source directory.

./build/build_atchem2.sh model_1/mechanism_test.fac model_1/configuration/ mcm/

Getting the same error message. Please see the attached image also.

[rs028]

Are you able to compile the test mechanism and run the tests? See the manual at the end of the installation section,

[morshedahmed17]

Hello,

The test runs are showing errors. Please see the attached.

[rs028]

I would say that something is wrong with your dependencies or the paths. Can you try to reinstall everything, maybe on a different machine if possible?

[rs028]

@morshedahmed17 did you solve the problem? Have you tried the development version (https://github.com/AtChem/AtChem2/archive/refs/heads/master.zip) instead of one of the releases?

[morshedahmed17]

I have solved the problem. I tried with my university cluster and it worked. Thanks