Closed johnbaums closed 9 years ago
Seems to have been a problem with data.table 1.9.3+ failing to detect the correct field separator in the data file. File separator now specified as \t in ALA4R 1.07.
x=occurrences(taxon="Chlorophyllum molybdites", download_reason_id=10)
x$data[1,] id catalogNumber 1 52ac818f-abc8-4535-9dc4-c6d46ae02c23 PERTH 911453 matchTaxonConceptLsid scientificNameOriginal 1 08159dd5-b9f7-4758-af64-a40852bd869a Chlorophyllum molybdites (G.Mey.) Massee commonName scientificName rank kingdom phylum class 1 Chlorophyllum molybdites species Fungi Basidiomycota Agaricomycetes order family genus species institutionCode 1 Agaricales Agaricaceae Chlorophyllum Chlorophyllum molybdites PERTH collectionCode locality latitudeOriginal longitudeOriginal geodeticDatum latitude 1 PERTH Wittenoom -33.46667 122.1333 GDA94 -33.46667 longitude coordinateUncertaintyInMetres country iBRARegion iMCRARegion 1 122.1333 NA Australia Mallee
state localGovernmentArea collector year month eventDate 1 Western Australia Esperance (S) Hall, E. 1982 3 1982-03-03 basisOfRecordOriginal basisOfRecord sex outlierForLayer taxonIdentificationIssue 1 PreservedSpecimen PreservedSpecimen el887 noIssue assumedPresentOccurrenceStatus countryInferredByCoordinates decimalLatLongConverted 1 TRUE FALSE TRUE detectedOutlier firstOfCentury firstOfMonth firstOfYear geodeticDatumAssumedWgs84 1 FALSE FALSE FALSE FALSE FALSE habitatMismatch homonymIssue incompleteCollectionDate invalidCollectionDate 1 FALSE FALSE FALSE FALSE mediaRepresentative nameNotInNationalChecklists 1 FALSE TRUE
occurrences()
does not parse data correctly whenuse_data_table=TRUE
. Example below.