ansell
commented
6 years ago This issue has happened again with 4 values in the List instead of 3 as shown in the trace.
The sequence of steps is convoluted as facets don't appear in the URL and hence you need to perform the steps to get them to show up:
Go to:
- Select Customise Filters
- Click on None (Only 10 facets are showing up, so ensuring that the one we want shows up)
- Then click on Class
- Click on Update
- Click on "Unknown" under the "Class" facet
The trouble this time is that if I copy the actual parameters that were shown in the log file to be used by the end of the sequence above, the resulting page shows results (but is not completely error free):
The stacktrace from the error/no results page is:
2018-04-05 12:19:53,338 [org.ala.biocache.dao.SearchDAOImpl] Error executing query with requestParams: q=lsid:urn:lsid:biodiversity.org.au:afd.taxon:e9e7db31-04df-41fb-bd8d-e0b0f3c332d6&fq=-class:*&start=0&pageSize=20&sort=first_loaded_date&dir=desc&qc=&facets=class&flimit=10&formattedQuery=lft:[103553 TO 105453]&facet=true EXCEPTION: Could not instantiate object of class au.org.ala.biocache.dto.OccurrenceIndex
org.apache.solr.client.solrj.beans.BindingException: Could not instantiate object of class au.org.ala.biocache.dto.OccurrenceIndex
at org.apache.solr.client.solrj.beans.DocumentObjectBinder.getBean(DocumentObjectBinder.java:71)
at org.apache.solr.client.solrj.beans.DocumentObjectBinder.getBeans(DocumentObjectBinder.java:50)
at org.apache.solr.client.solrj.response.QueryResponse.getBeans(QueryResponse.java:618)
at au.org.ala.biocache.dao.SearchDAOImpl.processSolrResponse(SearchDAOImpl.java:2602)
at au.org.ala.biocache.dao.SearchDAOImpl.findByFulltextSpatialQuery(SearchDAOImpl.java:714)
at au.org.ala.biocache.dao.SearchDAOImpl.findByFulltextSpatialQuery(SearchDAOImpl.java:689)
at sun.reflect.GeneratedMethodAccessor210.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:317)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:198)
at com.sun.proxy.$Proxy31.findByFulltextSpatialQuery(Unknown Source)
at au.org.ala.biocache.web.OccurrenceController.occurrenceSearch(OccurrenceController.java:735)
at sun.reflect.GeneratedMethodAccessor209.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.springframework.web.method.support.InvocableHandlerMethod.doInvoke(InvocableHandlerMethod.java:221)
at org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:136)
at org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:104)
at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandleMethod(RequestMappingHandlerAdapter.java:743)
at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:672)
at org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHandlerMethodAdapter.java:82)
at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:933)
at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:867)
at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:951)
at org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:842)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:624)
at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:827)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:731)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at au.org.ala.biocache.web.SimpleCORSFilter.doFilter(SimpleCORSFilter.java:33)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at au.org.ala.biocache.web.LoggerConfigFilter.doFilter(LoggerConfigFilter.java:26)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at com.opensymphony.sitemesh.webapp.SiteMeshFilter.obtainContent(SiteMeshFilter.java:129)
at com.opensymphony.sitemesh.webapp.SiteMeshFilter.doFilter(SiteMeshFilter.java:77)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:88)
at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:106)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:221)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:505)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:169)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:103)
at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:956)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:436)
at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1078)
at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:625)
at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:316)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.lang.Thread.run(Thread.java:748)
Caused by: org.apache.solr.client.solrj.beans.BindingException: Exception while setting value : [Vulnerable, Endangered Population, Vulnerable, Protected] on java.lang.String au.org.ala.biocache.dto.OccurrenceIndex.stateConservation
at org.apache.solr.client.solrj.beans.DocumentObjectBinder$DocField.set(DocumentObjectBinder.java:455)
at org.apache.solr.client.solrj.beans.DocumentObjectBinder$DocField.inject(DocumentObjectBinder.java:438)
at org.apache.solr.client.solrj.beans.DocumentObjectBinder.getBean(DocumentObjectBinder.java:67)
... 62 more
Caused by: java.lang.IllegalArgumentException: Can not set java.lang.String field au.org.ala.biocache.dto.OccurrenceIndex.stateConservation to java.util.ArrayList
at sun.reflect.UnsafeFieldAccessorImpl.throwSetIllegalArgumentException(UnsafeFieldAccessorImpl.java:167)
at sun.reflect.UnsafeFieldAccessorImpl.throwSetIllegalArgumentException(UnsafeFieldAccessorImpl.java:171)
at sun.reflect.UnsafeObjectFieldAccessorImpl.set(UnsafeObjectFieldAccessorImpl.java:81)
at java.lang.reflect.Field.set(Field.java:764)
at org.apache.solr.client.solrj.beans.DocumentObjectBinder$DocField.set(DocumentObjectBinder.java:449)
... 64 more
From logs on bws-b5-b, and replicable using the following query:
https://biocache-clustered.ala.org.au/occurrences/search?q=lsid:urn:lsid:biodiversity.org.au:afd.taxon:d0d70538-9caa-4cfb-863c-d0a9575f4da3&start=0&pageSize=20&sort=first_loaded_date&dir=desc&qc=&facets=taxon_name&facets=genus&facets=family&facets=kingdom&facets=common_name&facets=rank&facets=species_group&facets=taxonomic_issue&facets=type_status&facets=country&flimit=10&formattedQuery=lft:[103908%20TO%20103916]&facet=trueDirect JSON result/error can be found using:
https://biocache-clustered.ala.org.au/ws/occurrences/search?q=lsid:urn:lsid:biodiversity.org.au:afd.taxon:d0d70538-9caa-4cfb-863c-d0a9575f4da3&start=0&pageSize=20&sort=first_loaded_date&dir=desc&qc=&facets=taxon_name&facets=genus&facets=family&facets=kingdom&facets=common_name&facets=rank&facets=species_group&facets=taxonomic_issue&facets=type_status&facets=country&flimit=10&formattedQuery=lft:[103908%20TO%20103916]&facet=true