djtfmartin
commented
5 years ago Tested on Thu Nov 15, and sampling protocol is included.
Closed ansell closed 2 years ago
djtfmartin
commented
5 years ago Tested on Thu Nov 15, and sampling protocol is included.
javier-molina
commented
5 years ago This is related to FD issue https://support.ehelp.edu.au/a/tickets/22807
ansell
commented
5 years ago @djtfmartin
The Darwin Core Term samplingProtocol field is included in the list of fields for Full Darwin Core downloads but its values are not being added to the downloads.
See this download for an example of a search that has values for samplingProtocol in the biocache UI but has no values for samplingProtocol in the download:
ansell
commented
5 years ago For example, this record has a value next to Sampling Protocol (Mist net), but does not have a value in the column for samplingProtocol if downloaded:
https://biocache.ala.org.au/occurrences/d2f6facc-c346-40d4-889d-a58066838ffc
ansell
commented
5 years ago The field name definitions for samplingProtocol/sampling_protocol are present in https://biocache-ws.ala.org.au/ws/index/fields
{
"name": "sampling_protocol",
"dataType": "string",
"indexed": true,
"stored": true,
"multivalue": false,
"description": "The name of, reference to, or description of the method or protocol used during an Event.",
"info": "http://rs.tdwg.org/dwc/terms/samplingProtocol",
"dwcTerm": "samplingProtocol",
"downloadName": "sampling_protocol",
"classs": "Event"
}Running biocache process-single "d2f6facc-c346-40d4-889d-a58066838ffc"
shows the following with null as the processed value for samplingProtocol with no errors shown during processing:
{
"rowKey" : "d2f6facc-c346-40d4-889d-a58066838ffc",
"occurrence" : {
"occurrenceID" : null,
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"language" : null,
"license" : null,
"lifeStage" : null,
"modified" : null,
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"occurrenceDetails" : null,
"occurrenceRemarks" : null,
"occurrenceStatus" : "present",
"organismQuantity" : null,
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"resourceRelationshipID" : null,
"rights" : null,
"rightsholder" : null,
"samplingProtocol" : null,
"samplingEffort" : null,
"sex" : null,
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}
},
"classification" : {
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},
"event" : {
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}
},
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"dataResourceName" : "Australian Museum provider for OZCAM",
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"dataHubName" : null,
"institutionName" : "Australian Museum",
"collectionName" : "Australian Museum Ornithology Collection",
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},
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"cl958" : "Parkes",
"cl1085" : "Temperate: no dry season (warm summer)",
"cl12081" : "National Park",
"cl3004" : "upland",
"cl1918" : "Primarily Vegetated Natural & Semi-Natural Terrestrial Vegetation Woody Trees Closed",
"cl605" : "1-2 cultivations",
"cl2083" : "Eastern Australia Rivers & Streams",
"cl1057" : "MACQUARIE-BOGAN RIVERS",
"cl1063" : "GER Hunter Valley",
"cl923" : "Czwl",
"cl1052" : "Eastern Coastal Australia",
"cl678" : "Nature conservation",
"cl20" : "Brigalow Belt South",
"cl1050b" : "National Park",
"cl12021" : "Macquarie Uplands Province",
"cl932" : "Australia",
"cl613" : "6. Local knowledge",
"cl10903" : "Nature Conservation Reserve",
"cl1049" : "Liverpool Range",
"cl2081" : "Coolah Tops",
"cl2076" : "Unclassified",
"cl619" : "Modified",
"cl2021" : "Merriwa Plateau",
"cl10835" : "GW17",
"cl1068" : "GER National Corridor",
"cl614" : "Stubble ploughed in",
"cl2113" : "Upland",
"cl3003" : "MACQUARIE",
"cl2086" : "Wild woodlands",
"cl2125" : "Unclassified native vegetation",
"cl2079" : "Coolah Tops",
"cl10872" : "LEGISLATIVE COUNCIL",
"cl604" : "Fallow 3-9 months",
"cl2013" : "New South Wales",
"cl1048" : "Brigalow Belt South",
"cl620" : "Unknown/no data",
"cl1053" : "Brigalow Tropical Savanna",
"cl2022" : "Macquarie Uplands Province",
"cl2052" : "Most plant growth in summer, although summers are moisture limiting. Temperature limits growth in winter",
"cl1050" : "Coolah Tops",
"cl10900" : "Non-Indigenous, Native forest",
"cl10834" : "SW11",
"cl2124" : "Unclassified native vegetation",
"cl1076a" : "Woody savannas",
"cl2111" : "Central West",
"cl2045" : "GER Standard Boundary",
"cl618" : "Native forests and woodlands",
"cl1059" : "DARLING RIVER",
"cl914" : "Liverpool Range",
"cl22" : "New South Wales",
"cl611" : "1-2 cultivations",
"cl987" : "Warrumbungle Shire (A)",
"cl2012" : "Central West",
"cl2110" : "Murray-Darling Basin Boundary",
"cl1058" : "Murray-Darling Basin",
"cl959" : "Warrumbungle Shire (A)",
"cl617" : "Eucalypt open forests",
"cl2049" : "GER Great Eastern Ranges Initiative",
"cl10832" : "SS20",
"cl606" : "Stubble ploughed in",
"cl2120" : "Central West",
"cl1084" : "Temperate",
"cl10848" : "Bigambul, Githabul, Kambuwal, Gomeroi/Kamilaroi, Kwiambul, Ngarabal",
"cl916" : "Central West"
},
"miscProperties" : { },
"queryAssertions" : { },
"userQualityAssertion" : "",
"userAssertionStatus" : "",
"locationDetermined" : false,
"defaultValuesUsed" : false,
"geospatiallyKosher" : true,
"taxonomicallyKosher" : true,
"deleted" : false,
"userVerified" : false,
"firstLoaded" : "2018-12-04T13:54:26Z",
"lastModifiedTime" : "2018-12-04T14:42:30Z",
"dateDeleted" : "",
"lastUserAssertionDate" : "",
"rawFields" : {
"traversableAgain" : true,
"empty" : false
},
"nestedProperties" : {
"traversableAgain" : true,
"empty" : false
}
}Sounds like we should be indexing raw & processed samplingProtocol values and currently we are just indexing processed
djtfmartin
commented
5 years ago Added the indexing of raw_sampling_protocol. Once indexed in prod, will need to change darwin core download fields
djtfmartin
commented
2 years ago Tested today and samplingProtocol is in full darwin core download.
Please reopen if still an issue with a more recent example.
The Darwin Core Term
samplingProtocolfield is included in the list of fields for Full Darwin Core downloads but its values are not being added to the downloads.