Myrtle Rust datasets

[peggynewman]

Continue work to publish these datasets:

Databox code: https://github.com/AtlasOfLivingAustralia/databox/tree/master/data-resources/myrtle-rust

UQ Myrtle Rust Surveys of Eastern Australia

(In Databox - 15,044 records):

• https://collections-test.ala.org.au/public/show/dr21975 (Data description)
• https://events.test.ala.org.au/?datasetKey=dr21975&view=SURVEYS (Data collection event structure and measurements)
• https://biocache-test.ala.org.au/occurrences/search?fq=dataResourceUid:dr21975 (occurrences)

counts in spreadsheets: 2021 individual: 6294 2021 population: 1901 2020 individual: 2174 2020 population: 1012 Total: 11,381

Issues:

• [x] basis of record should be Human Observation
• [x] some species names to be corrected
• [x] update identifiers to remove event types from inside the identifiers (eg change survey:se:site:Flat_rock_SF:visit:20140415:sample:12:rust:seq1 to se:Flat_rock_SF:20140415:12:rust:seq1

Myrtle Rust Surveys - DAF (Qld), BRIP - Plant pathology herbarium

• Collectory
• Biocache
• Events

Issues:

• [x] update identifiers as per above
• [x] basis of record = Human Observation
• [ ] no metadata (PN)
• [ ] no license info (PN)

[peggynewman]

I have another myrtle rust dataset to do. Get in touch when you pick up this ticket to discuss.

[cha801p]

Ticket Update: February 7, 2024 (11:30 PM)

Issue: New events dataset to load.

Solution: Successfully load the new dataset into biocache and events

Actions Taken: Successfully loaded the data on the test environment

• [x] Code review
• [x] Data review
• [x] Data restructure - updated the identifiers to remove event types from inside the identifiers
• [x] New columns added - basis of record = Human Observation
• [x] Columns renamed
• [x] Species names corrected
• [x] DwcA created locally
• [x] Loaded the data on biocache-test and events-test

Issues Encountered: The issue with the event's structure in the data not displaying correctly in the events system has been investigated extensively. Upon thorough review and multiple reload attempts of the data, it was determined that the problem stemmed from discrepancies in the terms utilized within the meta.xml for eventName and eventType. These inconsistencies have been rectified, and the data has been reloaded to address and resolve the issue.

• [x] Necessary changes were made to the code

Loaded data for review: Myrtle rust surveys of Eastern Australia: biocache-test events.test

Myrtle Rust Surveys biocache-test events.test

Status: Request for @peggynewman to review the data

Next Step: Data to be loaded on prod

[peggynewman]

For Myrtle Rust Surveys, we still haven't been provided with a license, so it's still waiting, but please remove the locality column from events for now. dr21981

[peggynewman]

Action required: dr21981: remove locality column from events, but do not publish to prod yet dr21975: see issue #1045