Closed daxkellie closed 7 months ago
When trying to use is.na within galah_filter(), an error occurs because it accidentally thinks that * is a field. This is likely a parsing problem.
is.na
galah_filter()
*
library(galah) galah_call() |> identify("Gekkonidae") |> filter(is.na(decimalLongitude)) |> atlas_counts() #> Error in `check_fields()`: #> ! Can't use fields that don't exist. #> ℹ Use `search_all(fields)` to find a valid field ID. #> ✖ Can't find field(s) in #> • `galah_filter()`: * #> Backtrace: #> ▆ #> 1. └─galah::atlas_counts(...) #> 2. ├─dplyr::collect(slice_head(count(dr), n = limit)) #> 3. └─galah:::collect.data_request(slice_head(count(dr), n = limit)) #> 4. ├─dplyr::collect(compute(collapse(x, ...)), wait = wait, file = file) #> 5. ├─dplyr::compute(collapse(x, ...)) #> 6. ├─dplyr::collapse(x, ...) #> 7. └─galah:::collapse.data_request(x, ...) #> 8. ├─galah:::parse_query(parse_checks(build_checks(query_set))) #> 9. └─galah:::parse_checks(build_checks(query_set)) #> 10. ├─galah:::check_profiles(check_fields(check_reason(check_login(.query)))) #> 11. └─galah:::check_fields(check_reason(check_login(.query))) #> 12. └─rlang::abort(bullets)
Created on 2024-02-07 with reprex v2.0.2
As a temporary workaround, you can set run_checks = FALSE in galah_config(), bypassing the checks.
run_checks = FALSE
galah_config()
galah_config(run_checks = FALSE) galah_call() |> identify("Gekkonidae") |> filter(is.na(decimalLongitude)) |> atlas_counts() #> # A tibble: 1 × 1 #> count #> <int> #> 1 4609
When trying to use
is.na
withingalah_filter()
, an error occurs because it accidentally thinks that*
is a field. This is likely a parsing problem.Created on 2024-02-07 with reprex v2.0.2
As a temporary workaround, you can set
run_checks = FALSE
ingalah_config()
, bypassing the checks.Created on 2024-02-07 with reprex v2.0.2