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AtlasOfLivingAustralia / galah-R

Query living atlases from R
https://galah.ala.org.au
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selection_filters passes on local machine, fails on ecocloud #43

Closed shawnlaffan closed 3 years ago

shawnlaffan commented 3 years ago

I have this section of code below, adapted from the docs.

I am using galah 1.1.0

selection_filters <- select_filters(
    basisOfRecord = "HumanObservation",
    profile = "ALA")

On my local machine (windows 10, R 4.0.3) it runs without issue. However if I run it on a jupyter notebook via the ecocloud.org.au system (linux, R 3.6.1) then I get this error:

Error in validate_filters(filters) : 
  The following filters are invalid: basisOfRecord. Use `search_fields()` to get a list of valid options

This is possibly related to, or a duplicate of, #38 but I have not checked the internals to verify.

Shawn.

matildastevenson commented 3 years ago

Hi Shawn,

38 has been fixed in the dev branch- could you install the development version of galah to see if you still get the error?

shawnlaffan commented 3 years ago

This issue seems not to be fixed by the fix for #38.

I updated the code and ran the snippet, receiving the same error.

That of course assumes I have installed the branch correctly.

A student had the same issue today on their local machine when using 3.6, so it appears not to be an ecocloud/conda problem.

There is also an error with the taxa argument to ala_occurrences under 3.6 which I will raise as a separate issue. (throws error Error: taxa is not a character vector)