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AuReMe / emapper2gbk

Convert GFF, fastas, annotation table and species name into Genbank.
GNU Lesser General Public License v3.0
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Correcting Full taxonomy doesn't work (issue #9 ) #11

Closed Chabname closed 2 years ago

Chabname commented 2 years ago

Correction for : Full taxonomy doesn't work (issue #9 ) These modifications works on cli mode, directory mode or file mode. The taxonomy must be separated by ";" : Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Pasteurellaceae;Haemophilus The code check the last value, if the taxonomy is not found it will try with the previous value until getting to the first one It is possible to have blank between two ";". If there is a blank it will get the previous value. If all the taxonomy is not found : an error occur and the user is informed Tests has been written too. Thank you for reviewing it.

ArnaudBelcour commented 2 years ago

Hi @Chabname,

Sorry for the delay to answer.

Thank your for the pull request, I will review the code.