AuReMe / emapper2gbk

Convert GFF, fastas, annotation table and species name into Genbank.
GNU Lesser General Public License v3.0
12 stars 5 forks source link

Full taxonomy doesn't work #9

Closed Chabname closed 2 years ago

Chabname commented 2 years ago

Description

On directory mode, when we give a file with taxonomy values, having the full taxonomy and not the specie, the program only get the first value. I'm going to create a branch and propose a modification

What I Did

Example :
    Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Escherichia;Escherichia marmotae
The taxon find is for "Bacteria".
If we reverse it, it will find the taxon for "Escherichia marmotae"
If the first element is not found (because does not exist) it will not try to find the parent.
ArnaudBelcour commented 2 years ago

Added in 0.2.0.