Customizing the threshold used to keep a protein in the core proteome

AuReMe / esmecata

From taxonomic affiliations to annotated proteins using UniProt database.

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Customizing the threshold used to keep a protein in the core proteome #4

Closed cfrioux closed 3 years ago

cfrioux commented 3 years ago

So far all proteomes must have a protein in a cluster so that the cluster is kept for core proteome computation after MMseqs2. It seems reasonable that a threshold could be used here to account for the incertainty and noise in the proteomes. That threshold would be an option to esmecata clustering.

ArnaudBelcour commented 3 years ago

Added in #5.