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AuReMe / mpwt

Pathway Tools multiprocessing wrapper (for PathoLogic).
GNU Lesser General Public License v3.0
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Add gbk2pf converter. #30

Open ArnaudBelcour opened 4 years ago

ArnaudBelcour commented 4 years ago

As genbank formats created by different tools are different, we can have errors during PathoLogic. To solve these errors, we could convert genbank into PathoLogic Format.

The idea is to add a new argument:

mpwt gbk2pf -i input_folder -o output_folder --cpu number_cpu

This command takes as argument a folder containing the genbank (in the same structure than the input_folder of mpwt -f) and an output folder. It will then generates the PathoLogic Format files from the genbank.

ArnaudBelcour commented 4 years ago

It could also be useful to have a gff2pf converter.

So I will create a new command:

mpwt topf -i input_folder -o output_folder

ArnaudBelcour commented 4 years ago

Added in #32 but need more polishing in 0.5.3.

ArnaudBelcour commented 4 years ago

Fix some issues but it needs more testing and polishing in 0.5.4.

ArnaudBelcour commented 3 years ago

Fix numerous issues in #50.