an option to create taxon_id.tsv files from GenBank and GFF (issue #35).
an option to use operon predictor of Pathway Tools (issue #33).
an option to avoid downloading PubMed entries using a parameter in ptools-init.dat (added in Pathway Tools 23.5). But it needs more testing and maybe modification in 0.5.4 (issue #34).
a test for to_pf using GenBank and GFF from test data (issue #30).
errors and warnings counts in log files.
Fix:
numerous issues with to_pf (issue #30). But this option needs more testing and modification in 0.5.4.
Add:
Fix: