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Auditory-Biophysics-Lab / Slicer-ABLTemporalBoneSegmentation

3D Slicer extension featuring spacing resampling, fiducial registration, and rigid registration of temporal bone images.
BSD 3-Clause "New" or "Revised" License
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Error With Step 2 of Registration. #4

Closed arajesh17 closed 1 year ago

arajesh17 commented 3 years ago

Hello,

I am excited to try out this module. I love the method and the work that the lab has done. I recently downloaded the slicer extension and am having an error on step2 of the rigid registration. I have copied the error message below:

""" itkAdvancedImageToImageMetric.hxx File: D:\D\S\S-1-E-b\SlicerElastix-build\elastix\Common\CostFunctions\itkAdvancedImageToImageMetric.hxx Line: 969 Line: 969 Description: itk::ERROR: itk::ERROR: AdvancedMattesMutualInformationMetric(0000025C5EC9B2E0): Too many samples map outside moving image buffer: 0 / 1119 Description: itk::ERROR: itk::ERROR: AdvancedMattesMutualInformationMetric(0000025C5EC9B2E0): Too many samples map outside moving image buffer: 0 / 1119

Error occurred during actual registration. Error occurred during actual registration.

Errors occurred! Errors occurred! Error: Command 'elastix' returned non-zero exit status 1. Traceback (most recent call last): File "C:/Users/anand/AppData/Local/NA-MIC/Slicer 4.11.20210226/NA-MIC/Extensions-29738/ABLTemporalBoneSegmentation/lib/Slicer-4.11/qt-scripted-modules/ABLTemporalBoneSegmentationModule.py", line 635, in process_transform output = function() File "C:/Users/anand/AppData/Local/NA-MIC/Slicer 4.11.20210226/NA-MIC/Extensions-29738/ABLTemporalBoneSegmentation/lib/Slicer-4.11/qt-scripted-modules/ABLTemporalBoneSegmentationModule.py", line 812, in transform log_callback=self.update_rigid_progress) File "C:/Users/anand/AppData/Local/NA-MIC/Slicer 4.11.20210226/NA-MIC/Extensions-29738/ABLTemporalBoneSegmentation/lib/Slicer-4.11/qt-scripted-modules/ABLTemporalBoneSegmentationModule.py", line 1318, in apply_elastix_rigid_registration movingVolumeMaskNode=mask_node File "C:\Users\anand\AppData\Local\NA-MIC\Slicer 4.11.20210226\NA-MIC\Extensions-29738\SlicerElastix\lib\Slicer-4.11\qt-scripted-modules\Elastix.py", line 807, in registerVolumes self.logProcessOutput(ep) File "C:\Users\anand\AppData\Local\NA-MIC\Slicer 4.11.20210226\NA-MIC\Extensions-29738\SlicerElastix\lib\Slicer-4.11\qt-scripted-modules\Elastix.py", line 728, in logProcessOutput

Reloading module: ABLTemporalBoneSegmentationModule

raise subprocess.CalledProcessError(return_code, "elastix")

subprocess.CalledProcessError: Command 'elastix' returned non-zero exit status 1. """

I have placed 3 of the anatomical fiducials at step1. Then I have tried "Apply" on Step 1. The "apply" registration in step1 seems to transform the moving image out of the field of view. ( see attached image) image

Please advise for next steps. Thank you for your time.

e-simpson commented 1 year ago

Closing to track this issue in #8