As a researcher, I want to move T1-weighted anatomical images from subject space to a common template space (and generate a population template image), to assist with making comparisons in a longitudinal context (i.e, to visually demonstrate ventricle size changes over time), or in the context of a multi-site experiment (i.e., to compare acquisitions of a travelling-head)
Notes
This can be achieved by implementing the mrtrix3 command population_template in Pydra.
Acceptance Criteria
Given a list of T1-weighted anatomical images, when this processes is executed, the following set of outputs are generated:
[ ] anatomical brainmask in subject space (if not provided, this will be generated and used as an input to population_template
[ ] group-averaged T1-weighted image (i.e., the population template)
[ ] T1-weighted images in population-template space
[ ] anatomical brainmask in population-template space
[ ] transformation file (or warp image) to move other images between subject and template space
Metadata
Epic: #17 Feature: #79 Feature Release: Required knowledge: shallow
Description
As a researcher, I want to move T1-weighted anatomical images from subject space to a common template space (and generate a population template image), to assist with making comparisons in a longitudinal context (i.e, to visually demonstrate ventricle size changes over time), or in the context of a multi-site experiment (i.e., to compare acquisitions of a travelling-head)
Notes
This can be achieved by implementing the mrtrix3 command
population_templatein Pydra.Acceptance Criteria
Given a list of T1-weighted anatomical images, when this processes is executed, the following set of outputs are generated:
population_template