As a researcher, I want to register the T1-weighted anatomical image to a DWI image, so that I can subsequently conduct anatomically-constrained tractography (which requires the 5-tissue-type image in DWI space).
This can be done using FSL's epi_reg command, along with mrtrix command mrtransform, This process benefits from having a predefined white-matter mask (and subsequently, it is recommended to run this process after running #230
Acceptance Criteria
Given a T1-weighted image (and corresponding WM-mask) in native space and the corresponding DWI image, when this process is executed, the following outputs are generated:
Metadata
Epic:#17 Feature:#79 Feature Release: Required knowledge: shallow
Description
As a researcher, I want to register the T1-weighted anatomical image to a DWI image, so that I can subsequently conduct anatomically-constrained tractography (which requires the 5-tissue-type image in DWI space).
This can be done using FSL's
epi_regcommand, along with mrtrix commandmrtransform, This process benefits from having a predefined white-matter mask (and subsequently, it is recommended to run this process after running #230Acceptance Criteria
Given a T1-weighted image (and corresponding WM-mask) in native space and the corresponding DWI image, when this process is executed, the following outputs are generated:
[ ] T1-weighted image in DWI space
[ ] 5TT image in DWI space*
[ ] 5TTvis image in DWI space*
This is possible if #230 has been completed