[STORY] Deploy T1-weighted pipeline as XNAT "app" - Githubissues

Australian-Imaging-Service / pipelines

Scripts to generate analysis pipelines that can be run in XNAT's container service

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[STORY] Deploy T1-weighted pipeline as XNAT "app" #251

Open tclose opened 1 year ago

tclose commented 1 year ago

Metadata

Epic: #17 Feature: #238 Feature Release: Required knowledge: mid-level

Description

We need to be able to deploy pipeline build in #230 as XNAT "app" using deployment pipeline

Acceptance Criteria

[x] 1. Be able to run pipeline as XNAT pipeline
[ ] 2. Users should be able to select their parcellation file (ideally multiple different parcellations)
[ ] 3. Users should be able to access FS output files (potentially option to keep the fastsurfer output or not)

Blocked by

[ ]

### Tasks
- [ ] tidy up outputs directory (remove tmp folders, keep/move FS directory after final Parc is generated)
- [ ] create some sort of subject identifier (maybe this is automatically done?)