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AustralianCancerDataNetwork / pydicer

PYthon Dicom Image ConvertER
https://australiancancerdatanetwork.github.io/pydicer/
Apache License 2.0
20 stars 5 forks source link

Function to run pipeline #17

Closed dalmouiee closed 3 years ago

dalmouiee commented 3 years ago
pchlap commented 3 years ago

Sorry @dalmouiee

I inadvertently merged some code I was working on this without review (committed it to the dicom input branch)...

You can have a look at it, it is in pydicer/pipeline.py for now. It allows us to run the whole test pipeline using:

python -m pydicer.pipeline

Will be useful for development and we can improve on it as we add in more configuration options etc.

dalmouiee commented 3 years ago

No problem @pchlap , I figured that the pipeline function was for running the test via script, that'll be great during development. Great job on it!