Add insert_size module into INNUca pipeline
Save new MLST alleles
Save Pilon assembly statistics
Save original reads length
Save novel MLST alleles
Allow saving SPAdes scaffolds
Allow to change Bowtie2 alignment mode in trueCoverage_ReMatCh module
Allow valid alignments with insert sizes up to 2000 bp
ReMatCh to Python3
Add SPAdes v3.11.1, v3.13.0 and remove v3.9.0, v3.11.0
Add Pilon v1.23 (default)
Add Trimmomatic v0.38 (default)
Change Blast version in Docker image to 2.8.1
Update README
Add insert_size module into INNUca pipeline Save new MLST alleles Save Pilon assembly statistics Save original reads length Save novel MLST alleles Allow saving SPAdes scaffolds Allow to change Bowtie2 alignment mode in trueCoverage_ReMatCh module Allow valid alignments with insert sizes up to 2000 bp ReMatCh to Python3 Add SPAdes v3.11.1, v3.13.0 and remove v3.9.0, v3.11.0 Add Pilon v1.23 (default) Add Trimmomatic v0.38 (default) Change Blast version in Docker image to 2.8.1 Update README