B-UMMI / INNUca

INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search
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doubt in selection of INNUCA MLST scheme Yersinia enterocolitica #36

Open bala-ruokavirasto opened 2 years ago

bala-ruokavirasto commented 2 years ago

Dear Innuca Team,

I notice that INNUCA uses tuberfree-mlst biocontainers (ummidock-mlst-tuberfree.img) for the Yersinia enterocolitica analysis. When i look into carefully, i notice the removal of ypseudotuberculosis_achtman_3 folder is done within the database inside the containers in order to make default usage of McNally scheme over achtman scheme. May i know what is the rationale of selection of McNally scheme over achtman scheme?

Best Regards, Bala