Apparently I cannot use docker in my desktop so I followed the stand alone steps to install INNUca, and I got the following error when running the test script:
RUNNING FastQ integrity check
Fastq quality encoding: Sanger
Runtime :0.0h:0.0m:20.26s
END FastQ integrity check
RUNNING Estimated Coverage analysis
Estimated depth coverage: 93.4x
Runtime :0.0h:0.0m:6.52s
END Estimated Coverage analysis
RUNNING True coverage check
Traceback (most recent call last):
File "/home/shlomo/Programs/INNUca/test_INNUca/../INNUca.py", line 847, in <module>
main()
File "/home/shlomo/Programs/INNUca/test_INNUca/../INNUca.py", line 277, in main
species_genus, mlst_scheme_genus, spades_version=spades_version)
File "/home/shlomo/Programs/INNUca/test_INNUca/../INNUca.py", line 493, in run_innuca
clean_run_rematch=True)
File "/home/shlomo/Programs/INNUca/modules/utils.py", line 876, in wrapper
results = list(function(*args, **kwargs)) # guarantees return is a list to allow .insert()
File "/home/shlomo/Programs/INNUca/modules/trueCoverage_rematch.py", line 181, in run_true_coverage
import rematch_module
ImportError: No module named rematch_module
Problem running INNUca
Appreciate some help with this... (ReMatch is in the $PATH).
Hi,
Apparently I cannot use docker in my desktop so I followed the stand alone steps to install INNUca, and I got the following error when running the test script:
Appreciate some help with this... (ReMatch is in the $PATH).