B-UMMI / chewBBACA

BSR-Based Allele Calling Algorithm
GNU General Public License v3.0
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Add pyrodigal for gene prediction #179

Closed rfm-targa closed 1 year ago

rfm-targa commented 1 year ago

This PR adds Pyrodigal as a dependency. The code has been updated to use Pyrodigal instead of calling Prodigal with the subprocess module. This enabled speeding up gene prediction and simplified the code related to that step.