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B-UMMI / chewBBACA

BSR-Based Allele Calling Algorithm
GNU General Public License v3.0
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keep pyrodigal output in gff #207

Open juanjo255 opened 2 weeks ago

juanjo255 commented 2 weeks ago

Hello developers!

Thank you for such an great tool!

I wonder if there is an option or way to keep the pyrodigal cds predictions in a gff format or convert the tsv coordinates to gff

Thank you very much,

Juan

rfm-targa commented 1 week ago

Hello @juanjo255,

Thank you for your interest. We plan to add an option to save the FASTA files with the predicted CDSs in the output folder. I checked, and Pyrodigal can save the CDSs in several file formats (FASTA, GFF, Genbank). We can add another option to specify the file format, which would do what you asked. We will let you know when it's implemented.

Best regards,

Rafael

juanjo255 commented 1 week ago

Sounds good.

Thank you very much!