Homogeneize variable names according to a standard (snakecase, pascalcase, camelcase)

BAUDOTlab / scDataPipeline

Reusable standard single-cell RNA sequencing data analysis pipeline

MIT License

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Open Rumengol opened 8 months ago

Rumengol commented 8 months ago

During meeting, it was decided to go with snake_case as a convention. Still need to rewrite the variable names.

Rumengol commented 8 months ago

Related: optional parameters for qc -> for filters MIN_COUNTS / MAX_COUNTS -> UMI_THRESHOLDS MIN_FEAT -> FEATURE_THRESHOLDS

we should homogeneize with counts or umi or umi_counts feat or features

sevdarafatov commented 6 months ago

I started working on that issue but then decided that its not a big priority and it will be more efficient to solve this issue when the pipeline in its final form