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BAUDOTlab / scDataPipeline

Reusable standard single-cell RNA sequencing data analysis pipeline
MIT License
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Fix lapply over scenarios #95

Closed sevdarafatov closed 7 months ago

sevdarafatov commented 7 months ago

From 00_pipeline_launcher.R

# l.796-804
       "ctrl" = {
           lapply(scenarios, function(scenario){
             print(paste0("Regressing cell cycles with scenario ", scenario))
             rmarkdown::render(
             "04_additionalControls.Rmd",
               output_file = file.path(PATH_OUT_HTML, paste0("04_additionalControls_", DATASET, "_scenario_", scenario, "_", Sys.Date(), ".html"))
           )
        })
       },