BBMRI-cz / fhir-module

A data integration tool for BBMRI-ERIC biobanks.
Apache License 2.0
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Feat: add parsing map for dynamic configuration #5

Closed RadovanTomik closed 1 year ago

RadovanTomik commented 1 year ago

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codecov[bot] commented 1 year ago

Codecov Report

Patch coverage: 93.18% and project coverage change: -5.14% :warning:

Comparison is base (7d922be) 97.79% compared to head (124a40f) 92.65%.

:exclamation: Current head 124a40f differs from pull request most recent head fa2a0d1. Consider uploading reports for the commit fa2a0d1 to get more accurate results

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #5 +/- ## ========================================== - Coverage 97.79% 92.65% -5.14% ========================================== Files 9 29 +20 Lines 227 790 +563 ========================================== + Hits 222 732 +510 - Misses 5 58 +53 ``` | Flag | Coverage Δ | | |---|---|---| | integration | `48.18% <1.38%> (?)` | | | unit | `67.46% <92.04%> (?)` | | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BBMRI-cz#carryforward-flags-in-the-pull-request-comment) to find out more. | [Files Changed](https://app.codecov.io/gh/BBMRI-cz/fhir-module/pull/5?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BBMRI-cz) | Coverage Δ | | |---|---|---| | [main.py](https://app.codecov.io/gh/BBMRI-cz/fhir-module/pull/5?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BBMRI-cz#diff-bWFpbi5weQ==) | `0.00% <0.00%> (ø)` | | | [util/config.py](https://app.codecov.io/gh/BBMRI-cz/fhir-module/pull/5?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BBMRI-cz#diff-dXRpbC9jb25maWcucHk=) | `83.33% <81.25%> (ø)` | | | [model/gender.py](https://app.codecov.io/gh/BBMRI-cz/fhir-module/pull/5?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BBMRI-cz#diff-bW9kZWwvZ2VuZGVyLnB5) | `100.00% <100.00%> (ø)` | | | [model/sample\_donor.py](https://app.codecov.io/gh/BBMRI-cz/fhir-module/pull/5?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BBMRI-cz#diff-bW9kZWwvc2FtcGxlX2Rvbm9yLnB5) | `100.00% <100.00%> (ø)` | | | [persistence/condition\_xml\_repository.py](https://app.codecov.io/gh/BBMRI-cz/fhir-module/pull/5?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BBMRI-cz#diff-cGVyc2lzdGVuY2UvY29uZGl0aW9uX3htbF9yZXBvc2l0b3J5LnB5) | `93.33% <100.00%> (ø)` | | | [persistence/sample\_donor\_xml\_files\_repository.py](https://app.codecov.io/gh/BBMRI-cz/fhir-module/pull/5?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BBMRI-cz#diff-cGVyc2lzdGVuY2Uvc2FtcGxlX2Rvbm9yX3htbF9maWxlc19yZXBvc2l0b3J5LnB5) | `100.00% <100.00%> (ø)` | | | [persistence/sample\_xml\_repository.py](https://app.codecov.io/gh/BBMRI-cz/fhir-module/pull/5?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BBMRI-cz#diff-cGVyc2lzdGVuY2Uvc2FtcGxlX3htbF9yZXBvc2l0b3J5LnB5) | `100.00% <100.00%> (ø)` | | | [service/blaze\_service.py](https://app.codecov.io/gh/BBMRI-cz/fhir-module/pull/5?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BBMRI-cz#diff-c2VydmljZS9ibGF6ZV9zZXJ2aWNlLnB5) | `80.76% <100.00%> (ø)` | | | [.../unit/persistence/test\_condition\_xml\_repository.py](https://app.codecov.io/gh/BBMRI-cz/fhir-module/pull/5?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BBMRI-cz#diff-dGVzdC91bml0L3BlcnNpc3RlbmNlL3Rlc3RfY29uZGl0aW9uX3htbF9yZXBvc2l0b3J5LnB5) | `97.56% <100.00%> (+0.41%)` | :arrow_up: | | [...it/persistence/test\_sample\_donor\_xml\_repository.py](https://app.codecov.io/gh/BBMRI-cz/fhir-module/pull/5?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BBMRI-cz#diff-dGVzdC91bml0L3BlcnNpc3RlbmNlL3Rlc3Rfc2FtcGxlX2Rvbm9yX3htbF9yZXBvc2l0b3J5LnB5) | `97.77% <100.00%> (+0.34%)` | :arrow_up: | | ... and [1 more](https://app.codecov.io/gh/BBMRI-cz/fhir-module/pull/5?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BBMRI-cz) | | ... and [12 files with indirect coverage changes](https://app.codecov.io/gh/BBMRI-cz/fhir-module/pull/5/indirect-changes?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BBMRI-cz)

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