I just wanted to point out that the -w options apprears to not work as intended. I expected the frags and msa folders to be inside the run1/Ashure/ folder I have created, but instead these are output to the directory where I run the python script from.
Hello,
Firstly, thank you for creating this tool!
I just wanted to point out that the
-woptions apprears to not work as intended. I expected the frags and msa folders to be inside therun1/Ashure/folder I have created, but instead these are output to the directory where I run the python script from.Command:
ashure.py run -fq run1/raw_data/virus.fastq.gz -db run1/viruses.fasta -w run1/Ashure/ -o1 run1/Ashure/ashure_consensus.csv -r fgs,msa,cons,clstThanks, Sam