Closed dfornika closed 3 months ago
The overall analysis includes several stages:
It would be helpful for troubleshooting and data management if each stage wrote its outputs into a separate sub-directory.
Create an analysis_by_stage sub-directory under the --outdir
analysis_by_stage
--outdir
Create sub-directories under that, named like:
analysis_by_stage/00_read_normalization analysis_by_stage/01_assembly analysis_by_stage/02_scaffolding
analysis_by_stage/00_read_normalization
analysis_by_stage/01_assembly
analysis_by_stage/02_scaffolding
...etc. Below that, create an 'inputs' and an 'outputs' sub-directory.
Write bash script(s) into the analysis stage directories to document & aid with troubleshooting.
'Publish' final outputs under outdir.
outdir
The overall analysis includes several stages:
It would be helpful for troubleshooting and data management if each stage wrote its outputs into a separate sub-directory.
Create an
analysis_by_stage
sub-directory under the--outdir
Create sub-directories under that, named like:
analysis_by_stage/00_read_normalization
analysis_by_stage/01_assembly
analysis_by_stage/02_scaffolding
...etc. Below that, create an 'inputs' and an 'outputs' sub-directory.
Write bash script(s) into the analysis stage directories to document & aid with troubleshooting.
'Publish' final outputs under
outdir
.