FluViewer has a feature to check whether or not a BLAST database has already been made based on the FluViewer fasta database file. If it hasn't then FluViewer will run makeblastdb to make it on-the-fly before proceeding.
We're using the run() function from the fluviewer.analysis module to do that here:
FluViewer has a feature to check whether or not a BLAST database has already been made based on the FluViewer fasta database file. If it hasn't then FluViewer will run
makeblastdbto make it on-the-fly before proceeding.We're using the
run()function from thefluviewer.analysismodule to do that here:https://github.com/BCCDC-PHL/FluViewer/blob/e3151579cba477da3f65c0aa5e888ee528091bc1/fluviewer/database.py#L115
...but we're not importing that module so we get: