BCCDC-PHL / auto-cpo

Automation of Genomic Analyses for Carbapenemase-Producing Organisms (CPOs)
GNU General Public License v3.0
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Add option to analyze runs in reverse order #1

Closed dfornika closed 1 year ago

dfornika commented 1 year ago

By default, we scan through each fastq directory in lexicographic order by directory name. But we may be most interested in getting results for the most recent runs first, which are lexicographically last.

Add a boolean config option analyze_runs_in_reverse_order that will allow us to analyze runs in reverse order.