Outputs are currently being written directly under a directory named using the sequencing run ID, under the analysis_output_dir specified in the config. But we've been collecting outputs under sub-directories named short or hybrid depending on the type of analysis that was run.
This tool should automatically determine which type of analysis to run based on the type of sequencing run ID (illumina or nanopore), and deposit outputs under a sub-directory named short or hybrid as appropriate.
Outputs are currently being written directly under a directory named using the sequencing run ID, under the
analysis_output_dirspecified in the config. But we've been collecting outputs under sub-directories namedshortorhybriddepending on the type of analysis that was run.This tool should automatically determine which type of analysis to run based on the type of sequencing run ID (illumina or nanopore), and deposit outputs under a sub-directory named
shortorhybridas appropriate.