Add support for --samplesheet_input, similar to how we've done on our BCCDC-PHL/routine-assembly pipeline.
The samplesheet should include ID, R1, R2 fields. If/when Flu B support is added to BCCDC-PHL/FluViewer, we might also add an optional field to indicate which samples are known up-front to be Flu A or Flu B.
Add support for
--samplesheet_input, similar to how we've done on our BCCDC-PHL/routine-assembly pipeline.The samplesheet should include
ID,R1,R2fields. If/when Flu B support is added to BCCDC-PHL/FluViewer, we might also add an optional field to indicate which samples are known up-front to be Flu A or Flu B.