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BCCDC-PHL / ncov-tools-nf

A nextflow-based workflow for running ncov-tools
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Correct typo in variable name #13

Closed DiDigsDNA closed 3 years ago

DiDigsDNA commented 3 years ago

The used of 2010 in the variable below does not cause issues with the code... tuple path(ncov2010_artic_nf_analysis_dir), path(primer_scheme_dir), path(metadata) https://github.com/BCCDC-PHL/ncov-tools-nf/blob/e4455e563a3e76069fc37cd5a28bdbd88021c899/modules/ncov-tools.nf#L58

...however, to avoid future confusion, we should change ncov2010_artic_nf_analysis_dir to `ncov2019_artic_nf_analysis_dir'

Change in 4 other lines as well: https://github.com/BCCDC-PHL/ncov-tools-nf/blob/b2dd9003b0886fc46ebfa68bf11705f131152016/modules/ncov-tools.nf#L68

https://github.com/BCCDC-PHL/ncov-tools-nf/blob/b2dd9003b0886fc46ebfa68bf11705f131152016/modules/ncov-tools.nf#L69

https://github.com/BCCDC-PHL/ncov-tools-nf/blob/b2dd9003b0886fc46ebfa68bf11705f131152016/modules/ncov-tools.nf#L70

https://github.com/BCCDC-PHL/ncov-tools-nf/blob/b2dd9003b0886fc46ebfa68bf11705f131152016/modules/ncov-tools.nf#L71