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BCCDC-PHL / ncov-tools-nf

A nextflow-based workflow for running ncov-tools
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Two snpEff outputs not captured #17

Closed dfornika closed 3 years ago

dfornika commented 3 years ago

ncov-tools v1.3 runs snpEff, which creates two output files at the top-level of the ncov-tools output directory. We currently aren't publishing those to the --outdir in this pipeline.

Publish the snpEff_genes.txt and snpEff_summary.html outputs to --outdir

dfornika commented 3 years ago

This may not be necessary. It appears that those outputs only contain data for a single sample, so they're probably being over-written for each sample.