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BCCDC-PHL / ncov-tools-nf

A nextflow-based workflow for running ncov-tools
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Provide mechanism to run ncov-watch on multiple watchlists and summarize the results #24

Closed dfornika closed 3 years ago

dfornika commented 3 years ago

ncov-tools is configured to run ncov-watch against a single watchlist, which is passed as optional configuration via the config.yml file.

We will likely want to scan a number of different watchlists, and that set of watchlists will likely change over time.

Provide a mechanism to run ncov-watch multiple times, and to summarize the results for all pairwise combinations of samples and watchlists into a single summary file.