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BCCDC-PHL / pipeline-provenance-schema

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Incorporate custom scripts into schema #2

Open dfornika opened 6 months ago

dfornika commented 6 months ago

We often use custom scripts as part of our overall pipeline. They're distinct from 'tools' like assemblers and aligners. They're generally bundled in the bin directory for a nextflow pipeline, and they aren't versioned independently of the overall pipeline.

Proposed schema:

scripts:
  - script_name: <filename_of_script>
    interpreter_name: python
    interpreter_version: <python_version>
    libraries:
      - library_name: pandas
        library_version: 2.3.1
    parameters:
      - parameter: <some_parameter>
        value: <some_value>