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BCCDC-PHL / tbprofiler-nf

Nextflow Wrapper for TBProfiler
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Transpose resistance report #1

Open dfornika opened 2 years ago

dfornika commented 2 years ago

TBProfiler generates a resistance report that lists each drug on a separate row. This makes it a bit difficult to gather together resistance info from multiple samples. It would be convenient to have a resistance report that is structured to be one row per library.

dfornika commented 1 year ago

This script may be helpful for this:

https://github.com/Public-Health-Bioinformatics/galaxy_tools/blob/tbprofiler_json_to_tabular/tools/tbprofiler_json_to_tabular/tbprofiler_json_to_tabular.py